PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01684.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 196aa    MW: 21403.7 Da    PI: 9.672
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01684.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.29.1e-182163244
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    rie+k +r+vt++kR+ gi+KK +EL  LC+a vav ifs++ 
  Pahal.D01684.1 21 RIEDKEKRHVTLCKRKGGIFKKCSELQLLCGAHVAVAIFSKKE 63
                    8***************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.7731260IPR002100Transcription factor, MADS-box
SMARTSM004329.5E-201271IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.81E-191367IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-131434IPR002100Transcription factor, MADS-box
PfamPF003198.7E-182162IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-133449IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-134970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MTMVKPGKKT SKGRQKIEIR RIEDKEKRHV TLCKRKGGIF KKCSELQLLC GAHVAVAIFS  60
KKEEQPQPPT AGGRPSRGGN VFAMGTPSDD HVLRRFAPLP GDEVGLLLPA GADEEAEALV  120
KAEKDWMRAV GEKVQQAAEA AGKPFWWEAD VEALGEAELP EFARALQRIR EIVQREADKL  180
RTSAPPAVAP AAWHP*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965484.14e-91PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLK3XZB53e-89K3XZB5_SETIT; Uncharacterized protein
STRINGSi007275m8e-89(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-20AGAMOUS-like 62